В соответствии со статьями, которые я прочитал, правильный способ разрешить легкие миграции основных данных данных - это передать параметры addPersistentStoreWithType:
let mOptions = [NSMigratePersistentStoresAutomaticallyOption: true,
NSInferMappingModelAutomaticallyOption: true]
try coordinator!.addPersistentStoreWithType(
NSSQLiteStoreType, configuration: nil, URL: url, options: mOptions)
Но в моем проекте Xcode 8 Swift 3 я не могу найти, где вызывается addPersistentStoreWithType. Это единственный core data код, который был сгенерирован при создании моего проекта:
 // MARK: - Core Data stack
lazy var persistentContainer: NSPersistentContainer = {
    /*
     The persistent container for the application. This implementation
     creates and returns a container, having loaded the store for the
     application to it. This property is optional since there are legitimate
     error conditions that could cause the creation of the store to fail.
    */
    let container = NSPersistentContainer(name: "Habits")
    container.loadPersistentStores(completionHandler: { (storeDescription, error) in
        if let error = error as NSError? {
            // Replace this implementation with code to handle the error appropriately.
            // fatalError() causes the application to generate a crash log and terminate. You should not use this function in a shipping application, although it may be useful during development.
            /*
             Typical reasons for an error here include:
             * The parent directory does not exist, cannot be created, or disallows writing.
             * The persistent store is not accessible, due to permissions or data protection when the device is locked.
             * The device is out of space.
             * The store could not be migrated to the current model version.
             Check the error message to determine what the actual problem was.
             */
            fatalError("Unresolved error \(error), \(error.userInfo)")
        }
    })
    return container
}()
// MARK: - Core Data Saving support
func saveContext () {
    let context = persistentContainer.viewContext
    if context.hasChanges {
        do {
            try context.save()
        } catch {
            // Replace this implementation with code to handle the error appropriately.
            // fatalError() causes the application to generate a crash log and terminate. You should not use this function in a shipping application, although it may be useful during development.
            let nserror = error as NSError
            fatalError("Unresolved error \(nserror), \(nserror.userInfo)")
        }
    }
}
Как включить легкие миграции в Xcode 8 с помощью Swift 3?